Publications
2021
Frequency-specific, valveless flow control in insect-mimetic microfluidic devices
Chatterjee, K., Graybill, P. M., Socha, J. J., Davalos, R. V., & Staples, A. E. (2021). Frequency-specific, valveless flow control in insect-mimetic microfluidic devices. Bioinspir. Biomim., 16, 036004.
A 3D-printed microneedle array and reservoir for testing transdermal drug delivery
Zhang, S., Poulos, D., Khoja, A. E., Chatterjee, K., & Staples, A. E. (2021). A 3D-printed microneedle array and reservoir for testing transdermal drug delivery. Bulletin of the American Physical Society, Q14.00005.
Between the branches: Recent results from large eddy simulations of local coral colony flow fields
Staples, A. E. (2021). Between the branches: Recent results from large eddy simulations of local coral colony flow fields. Bulletin of the American Physical Society, A02.00001.
A biologically accurate model of directional hearing in the parasitoid fly Ormia ochracea
Mikel-Stites, M. R., Salcedo, M. K., Socha, J. J., Marek, P. E., & Staples, A. E. (2021). 3D-imaging inspired improvements to hearing model in parasitoid fly Ormia ochracea. bioRxiv 2021.09.15.460520.
2020
Dynamic analysis and design optimization of a drag-based vibratory swimmer
Tahmasian, S., Jafaryzad, A., Bulzoni, N. L., & Staples, A. E. (2020). Dynamic analysis and design optimization of a drag-based vibratory swimmer. Fluids, 5(1), 38.
Feature engineering and symbolic regression methods for detecting hidden physics from sparse sensor observation data
Vaddireddy, H., Rasheed, A., Staples, A. E., & San, O. (2020). Feature engineering and symbolic regression methods for detecting hidden physics from sparse sensor observation data. Physics of Fluids, 32(1), 015113.
Effects of coral colony morphology on local turbulent flow dynamics
Hossain, M. M. & Staples, A. E. (2020). Effects of coral colony morphology on local turbulent flow dynamics. Bulletin of the American Physical Society, X01.00014.
Three-dimensional imaging of tympana provides critical correction to model for hearing in a parasitoid fly
Mikel-Stites, M. R., Salcedo, M., Socha, J. J., & Staples, A. E. (2020). Three-dimensional imaging of tympana provides critical correction to model for hearing in a parasitoid fly. Bulletin of the American Physical Society, X01.00015.
Design optimization of a drag-based vibratory swimmer using averaging
Tahmasian, S. & Staples, A. E. (2020). Design optimization of a drag-based vibratory swimmer using averaging. Bulletin of the American Physical Society, Q03.00034.
Frequency-specific, valveless flow control in insect-mimetic microfluidic devices
Chatterjee, K., Graybill, P. M., Socha, J. J., Davalos, R. V., & Staples, A. E. (2020). Frequency-specific, valveless flow control in insect-mimetic microfluidic devices. arXiv:2010.07495.
Development of an open source implementation of automated honey bee waggle dance decoding using particle image velocimetry
Khoja, A., Kwitny, M., Staples, A. E., & Schurch, R. (2020, March). Development of an open source implementation of automated honey bee waggle dance decoding using particle image velocimetry. In INTEGRATIVE AND COMPARATIVE BIOLOGY (Vol. 60, pp. E357-E357). JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA: OXFORD UNIV PRESS INC.
Hearing better when lopsided: Tympanal ssymmetry may enhance hearing in the parasitoid fly Ormia ochracea
Mikel-Stites, M. R., Staples, A. E., & Marek, P. (2020, March). Hearing better when lopsided: Tympanal ssymmetry may enhance hearing in the parasitoid fly Ormia ochracea. In INTEGRATIVE AND COMPARATIVE BIOLOGY (Vol. 60, pp. E161-E161). JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA: OXFORD UNIV PRESS INC.
Mass transport and turbulent statistics within two branching coral colonies
Hossain, M. M., & Staples, A. E. (2020). Mass transport and turbulent statistics within two branching coral colonies. Fluids, 5(3), 153.
Passive vortical flows compensate for low flow speeds in the interior of a coral colony
Hossain, M., & Staples, A. (2020, March). Passive vortical flows compensate for low flow speeds in the interior of a coral colony. In INTEGRATIVE AND COMPARATIVE BIOLOGY (Vol. 60, pp. E106-E106). JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA: OXFORD UNIV PRESS INC.
Tympanal asymmetry in a parasitoid fly: small asymmetries produce big gains
Mikel-Stites, M., & Staples, A. E. (2020). Tympanal asymmetry in a parasitoid fly: small asymmetries produce big gains.
Effects of coral colony morphology on turbulent flow dynamics
Hossain, M. M. & Staples, A. E. (2020). Effects of coral colony morphology on turbulent flow dynamics. PLOS ONE, 15(10), e0225676.
2019
Passive vortical flows enhance mass transfer in a coral colony
Hossain, M. M., & Staples, A. (2019). Passive vortical flows enhance mass transfer in a coral colony. APS, M02-001.
Effects of coral colony morphology on turbulent flow dynamics
Hossain, M. M., & Staples, A. E. (2019). Effects of coral colony morphology on turbulent flow dynamics. bioRxiv, 839902.
Can you hear better if you're lopsided? Tympanal asymmetry may enhance hearing in a parasitoid fly
Mikel-Stites, M., Marek, P., & Staples, A. (2019). Can you hear better if you're lopsided? Tympanal asymmetry may enhance hearing in a parasitoid fly. APS, M03-015.
Passive vortical flows enhance mass transport in the interior of a coral colony
Hossain, M. M., & Staples, A. E. (2019). Passive vortical flows enhance mass transport in the interior of a coral colony. Physics of Fluids, 31(6), 061701.
Feature engineering and symbolic regression methods for detecting hidden physics from sparse sensors
Vaddireddy, H., Rasheed, A., Staples, A. E., & San, O. (2019). Feature engineering and symbolic regression methods for detecting hidden physics from sparse sensors. arXiv preprint arXiv:1911.05254.
2018
Insect respiratory network-inspired microfluidic devices act as hydrodynamic ratchets
Chatterjee, K., Graybill, P., Staples, A., & Davalos, R. (2018). Insect respiratory network-inspired microfluidic devices act as hydrodynamic ratchets. APS, 2018, Y54-011.
Insect-inspired flow control in microfluidic networks
Chatterjee, K., Graybill, P., Garrett, J., Davalos, R., Socha, J., & Staples, A. (2018). Insect-inspired flow control in microfluidic networks. Bulletin of the American Physical Society, 63.
Sea anemone and coral polyp tentacle response to wave motion
Staples, A. (2018, February). Sea anemone and coral polyp tentacle response to wave motion. In 2018 Ocean Sciences Meeting. AGU.
Slip flow in a microchannel driven by rhythmic wall contractions
Chatterjee, K., & Staples, A. (2018). Slip flow in a microchannel driven by rhythmic wall contractions. Acta Mechanica, 229(10), 4113-4129.
Steady state rolling and dynamic response of a tire at low frequency
Hossain, M. M., Staples, A., Takami, K., & Furukawa, T. (2018). Steady state rolling and dynamic response of a tire at low frequency. International Journal of Aerospace and Mechanical Engineering, 12(4), 416-422.
A coarse-grid projection method for accelerating incompressible flow computations
San, O., & Staples, A. E. (2013). A coarse-grid projection method for accelerating incompressible flow computations. Journal of Computational Physics, 233, 480-508.
LES of turbulent flow over a single coral colony
Staples, A., & Hossain, M. M. (2018). LES of turbulent flow over a single coral colony. Bulletin of the American Physical Society, 63.
Ant-Man and the Wasp: Microscale respiration and microfluidic technology
Staples, A., & Mikel-Stites, M. (2018). Ant-Man and the Wasp: Microscale respiration and microfluidic technology. Superhero Science and Technology, 1(1).
Why Ant-Man and the Wasp need helmets to breathe
Mikel-Stites, M., & Staples, A. (2018). Why Ant-Man and the Wasp need helmets to breathe. Bulletin of the American Physical Society, 63.
Frequency-specific, single-actuation flow control in insect-mimetic valveless microfluidic devices
Chatterjee, K., Graybill, P., Davalos, R., Socha, J., & Staples, A. (2018). Frequency-specific, single-actuation flow control in insect-mimetic valveless microfluidic devices. Analytical and Experimental Investigation of Insect Respiratory System Inspired Microfluidics, 77.
Approximate deconvolution large eddy simulation of a stratified two-layer quasigeostrophic ocean model
San, O., Staples, A. E., & Iliescu, T. (2013). Approximate deconvolution large eddy simulation of a stratified two-layer quasigeostrophic ocean model. Ocean Modelling, 63, 1-20.
Approximate deconvolution large eddy simulation of a barotropic ocean circulation model
San, O., Staples, A. E., Wang, Z., & Iliescu, T. (2011). Approximate deconvolution large eddy simulation of a barotropic ocean circulation model. Ocean Modelling, 40(2), 120-132.
High-order methods for decaying two-dimensional homogeneous isotropic turbulence
San, O., & Staples, A. E. (2012). High-order methods for decaying two-dimensional homogeneous isotropic turbulence. Computers & Fluids, 63, 105-127.
A finite-element coarse-grid projection method for incompressible flow simulations
Kashefi, A., & Staples, A. E. (2018). A finite-element coarse-grid projection method for incompressible flow simulations. Advances in Computational Mathematics, 44(4), 1063-1090.
2016
A finite-element coarse-grid projection method: A dual acceleration/mesh refinement tool for incompressible flows
Kashefi, A., & Staples, A. E. (2016). A finite-element coarse-grid projection method: A dual acceleration/mesh refinement tool for incompressible flows. arXiv preprint arXiv:1610.06993.
Non-invasive estimation of coral tentacle material properties using underwater PIV data
Staples, A., Asher, S., & Shavit, U. (2016). Non-invasive estimation of coral tentacle material properties using underwater PIV data. APS, A19-001.
Verifiable Quantum Computing
Kashefi, Elham. Verifiable Quantum Computing. 2016, p. E44.001.
Dynamics of a high viscosity layer in response to shear flow
Esmaili, E., & Staples, A. (2016). Dynamics of a high viscosity layer in response to shear flow. APS, KP1-069.
Passive scalar transport to and from the surface of a Pocillopora coral colony
Hossain, M. M., & Staples, A. (2016). Passive scalar transport to and from the surface of a Pocillopora coral colony. APS, A19-002.
Acceleration of incremental-pressure-correction incompressible flow computations using a coarse-grid projection method
Kashefi, A., & Staples, A. (2016). Acceleration of incremental-pressure-correction incompressible flow computations using a coarse-grid projection method. APS, L29-001.
2015
Rarefaction effects in microchannel gas flow driven by rhythmic wall contractions
Chatterjee, K., & Staples, A. (2015). Rarefaction effects in microchannel gas flow driven by rhythmic wall contractions. APS, H8-010.
A rules-based simulation of bacterial turbulence
Mikel-Stites, M., & Staples, A. (2015). A rules-based simulation of bacterial turbulence. APS, G23-009.
Large-eddy simulation of turbulent barotropic flows in spectral space on a sphere
Azadani, L. N., & Staples, A. E. (2015). Large-eddy simulation of turbulent barotropic flows in spectral space on a sphere. Journal of the Atmospheric Sciences, 72(5), 1727-1742.
A model for insect tracheolar flow
Staples, A., & Chatterjee, K. (2015). A model for insect tracheolar flow. APS, G26-004.
A USNCTAM report on recent trends in mechanics
Jung, S. S., Staples, A. E., Dabiri, J. O., Marsden, A. L., Prakash, M., Davis, K. A., ... & Sznitman, J. A USNCTAM report on recent trends in mechanics.
A coarse-grid-projection acceleration method for finite-element incompressible flow computations
Kashefi, A., & Staples, A. (2015). A coarse-grid-projection acceleration method for finite-element incompressible flow computations. APS, R7-004.
A posteriori analysis of low-pass spatial filters for approximate deconvolution large eddy simulations of homogeneous incompressible flows
San, O., Staples, A. E., & Iliescu, T. (2015). A posteriori analysis of low-pass spatial filters for approximate deconvolution large eddy simulations of homogeneous incompressible flows. International Journal of Computational Fluid Dynamics, 29(1), 40-66.
Computational analysis of the flow field inside a coral colony
Hossain, M. M., & Staples, A. (2015). Computational analysis of the flow field inside a coral colony. APS, L7-002.
2014
Effects of coral colony properties on the dissipation of wave energy
Staples, A., & Azadani, L. (2014). Effects of coral colony properties on the dissipation of wave energy. APS, H1-005.
Comparison of two-dimensional turbulence on the surface of a sphere with two-dimensional turbulence on a plane
Azadani, L., & Staples, A. (2014). Comparison of two-dimensional turbulence on the surface of a sphere with two-dimensional turbulence on a plane. APS, M17-010.
A three-dimensional model for flow pumping in a microchannel inspired by insect respiration
Aboelkassem, Y., & Staples, A. E. (2014). A three-dimensional model for flow pumping in a microchannel inspired by insect respiration. Acta Mechanica, 225(2), 493-507.
Effect of sinusoidal perturbation of the inner cylinder on the stability criteria in a wide gap Taylor-Couette flow
Chatterjee, K., & Staples, A. (2014). Effect of sinusoidal perturbation of the inner cylinder on the stability criteria in a wide gap Taylor-Couette flow. APS, D11-001.
Explicit filtering in large eddy simulation of barotropic turbulence in spectral space
Azadani, L. N., & Staples, A. E. (2014). Explicit filtering in large eddy simulation of barotropic turbulence in spectral space. arXiv preprint arXiv:1404.1423.
Fluid flow simulation and energetic analysis of anomalocarididae locomotion
Mikel-Stites, M., & Staples, A. (2014). Fluid flow simulation and energetic analysis of anomalocarididae locomotion. APS, L12-012.
2013
Selective pumping in a network: insect-style microscale flow transport
Aboelkassem, Y., & Staples, A. E. (2013). Selective pumping in a network: insect-style microscale flow transport. Bioinspiration & biomimetics, 8(2), 026004.
Stokeslets-meshfree computations and theory for flow in a collapsible microchannel
Aboelkassem, Y., & Staples, A. E. (2013). Stokeslets-meshfree computations and theory for flow in a collapsible microchannel. Theoretical and Computational Fluid Dynamics, 27(5), 681-700.
An efficient coarse grid projection method for quasigeostrophic models of large-scale ocean circulation
San, O., & Staples, A. E. (2013). An efficient coarse grid projection method for quasigeostrophic models of large-scale ocean circulation. International Journal for Multiscale Computational Engineering, 11(5).
An efficient coarse grid projection method for quasigeostrophic models of large-scale ocean circulation
San, O., & Staples, A. E. (2013). An efficient coarse grid projection method for quasigeostrophic models of large-scale ocean circulation. International Journal for Multiscale Computational Engineering, 11(5).
A spectral adaptive mesh refinement method for the Burgers equation
Nasr Azadani, L., & Staples, A. (2013). A spectral adaptive mesh refinement method for the Burgers equation. APS, 2013, W39-007.
A bioinspired pumping model for flow in a microtube with rhythmic wall contractions
Aboelkassem, Y., & Staples, A. E. (2013). A bioinspired pumping model for flow in a microtube with rhythmic wall contractions. Journal of Fluids and Structures, 42, 187-204.
Approximate deconvolution large eddy simulation of atmospheric Turbulence in spectral space
Nasr Azadani, L., & Staples, A. (2013). Approximate deconvolution large eddy simulation of atmospheric Turbulence in spectral space. APS, A1-007.
Adaptive resolution refinement for pseudospectral simulations of isotropic homogeneous turbulence
Azadani, L. N., & Staples, A. E. (2013). Adaptive resolution refinement for pseudospectral simulations of isotropic homogeneous turbulence. International Journal of Computational Fluid Dynamics, 27(8-10), 342-347.
Approximate deconvolution large eddy simulation of a stratified two-layer quasigeostrophic ocean model
San, O., Staples, A. E., & Iliescu, T. (2013). Approximate deconvolution large eddy simulation of a stratified two-layer quasigeostrophic ocean model. Ocean Modelling, 63, 1-20.
2012
A posteriori analysis of spatial filters for approximate deconvolution large eddy simulations of homogeneous incompressible flows
Staples, A., & San, O. (2012). A posteriori analysis of spatial filters for approximate deconvolution large eddy simulations of homogeneous incompressible flows. APS, A22-001.
A spectral adaptive mesh refinement method for homogenous isotropic turbulence
Nasr Azadani, L., & Staples, A. (2012). A spectral adaptive mesh refinement method for homogenous isotropic turbulence. APS, D5-009.
Stationary two-dimensional turbulence statistics using a Markovian forcing scheme
San, O., & Staples, A. E. (2013). Stationary two-dimensional turbulence statistics using a Markovian forcing scheme. Computers & Fluids, 71, 1-18.
An improved model for reduced-order physiological fluid flows
San, O., & Staples, A. E. (2012). An improved model for reduced-order physiological fluid flows. Journal of Mechanics in Medicine and Biology, 12(03), 1250052.
Flow transport in a microchannel induced by moving wall contractions: a novel micropumping mechanism
Aboelkassem, Y., & Staples, A. E. (2012). Flow transport in a microchannel induced by moving wall contractions: a novel micropumping mechanism. Acta Mechanica, 223(3), 463-480.
A coarse-grid projection method for accelerating incompressible flow computations
San, O., & Staples, A. E. (2013). A coarse-grid projection method for accelerating incompressible flow computations. Journal of Computational Physics, 233, 480-508.
Dynamics of pulsatile flows through elastic microtubes
San, O., & Staples, A. E. (2012). Dynamics of pulsatile flows through elastic microtubes. International Journal of Applied Mechanics, 4(01), 1250006.
Selective pumping in a network: A novel bioinspired flow transport paradigm
Aboelkassem, Y., & Staples, A. (2012). Selective pumping in a network: A novel bioinspired flow transport paradigm. APS, D7-007.
High-order methods for decaying two-dimensional homogeneous isotropic turbulence
San, O., & Staples, A. E. (2012). High-order methods for decaying two-dimensional homogeneous isotropic turbulence. Computers & Fluids, 63, 105-127.
Large eddy simulation of the quasi-geostrophic equations of oceanic flows
Iliescu, T., San, O., Wang, Z., Foster, E., & Staples, A. (2012). Large eddy simulation of the quasi-geostrophic equations of oceanic flows. AGUFM, 2012, NG51D-1791.
2011
Application of equation-free coarse projective integration for accelerating turbulence simulations
Nasr Azadani, L., Staples, A., & San, O. (2011). Application of equation-free coarse projective integration for accelerating turbulence simulations. APS, A5-002.
Approximate deconvolution large eddy simulation of a barotropic ocean circulation model
San, O., Staples, A. E., Wang, Z., & Iliescu, T. (2011). Approximate deconvolution large eddy simulation of a barotropic ocean circulation model. Ocean Modelling, 40(2), 120-132.
2009
An efficient algorithm for computing physiological fluid flows
Staples, A., & San, O. (2009). An efficient algorithm for computing physiological fluid flows. APS, 62, EL-008.
Controlling transition in Taylor-Couette flow with spatial forcing
Aboelkassem, Y., & Staples, A. (2009). Controlling transition in Taylor-Couette flow with spatial forcing. APS, 62, PP-007.
2007
The pulsed flow equations for modeling physiological systems in bioloigcal organisms as quasi-1D fluid flows
Staples, A., Boris, J., & Oran, E. The pulsed flow equations for modeling physiological systems in bioloigcal organisms as quasi-1D fluid flows.
Flow dynamics in a coupled circulatory-respiratory system
Kaplan, C., Staples, A., Oran, E., Kailasanath, K., & Boris, J. (2007). Flow dynamics in a coupled circulatory-respiratory system. APS, 60, FD-006.
2006
Numerical study of multiple shock-bubble interactions
Li, X., Gamezo, V., Oran, E., Staples, A., & Wu, L. (2006). Numerical study of multiple shock-bubble interactions. APS, 59, AN-004.
Low-dimensional models for physiological systems: Nonlinear coupling of gas and liquid Flows
Staples, A. E., Oran, E. S., Boris, J. P., & Kailasanath, K. (2006). Low-dimensional models for physiological systems: Nonlinear coupling of gas and liquid Flows. APS, 59, GA-002.
2004
Flapping membranes for thrust production
Jiménez, J. M., Buchholz, J. H. J., Staples, A. E., Allen, J. J., & Smits, A. J. (2003). Flapping membranes for thrust production. In IUTAM Symposium on Integrated Modeling of Fully Coupled Fluid Structure Interactions Using Analysis, Computations and Experiments (pp. 115-124). Springer, Dordrecht.